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OTN Metadata Sheets and templates

Information for the OTN workshop in June 2015. This workshop will focuss on demonstrating how to visualise and analyse OTN data in R. It will include tutorials on how to use basic GIS tools in R and a section on advance methods with TMB.

A package to pull dive information and create a dive shape profile

Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.

This gitlab project contains the package swim, which fits Switching Movement Models.

Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.

Information for TMB lunch and learn organise for the ICFT conference in July 2015

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.

testing a vtrack workflow using glatos and FACT data

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.

A repository for Innovasea VMT mounting design ideas.

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.

Some demo scripts showing how to access data in an ERDDAP instance.

Code associated with the manuscript: Auger-Methe, et al. State-space models' dirty little secrets: even simple linear Gaussian models can have parameter and state estimation problems.

Lab for Fall 2017's BIOL 4323 : getting started accessing and analyzing acoustic telemetry data in R using JuPyTeR notebooks for reproducability.