Code associated with the manuscript: Auger-Methe, et al. State-space models' dirty little secrets: even simple linear Gaussian models can have parameter and state estimation problems.

This gitlab project contains the package swim, which fits Switching Movement Models.

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.

Information for the OTN workshop in June 2015. This workshop will focuss on demonstrating how to visualise and analyse OTN data in R. It will include tutorials on how to use basic GIS tools in R and a section on advance methods with TMB.

A few examples of how to use R packages to pull environmental data and match it to your geospatial data

testing a vtrack workflow using glatos and FACT data

Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.

Information for TMB lunch and learn organise for the ICFT conference in July 2015

Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.

resonATe, OTN's acoustic data analysis library for Python, and glatos, an R package mantained by the Hammond Bay lab on the Great Lakes, are two options for simplifying the cleaning and visualization of acoustic telemetry datasets.

A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.