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resonATe, OTN's acoustic data analysis library for Python, and glatos, an R package mantained by the Hammond Bay lab on the Great Lakes, are two options for simplifying the cleaning and visualization of acoustic telemetry datasets.
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Lab for Fall 2017's BIOL 4323 : getting started accessing and analyzing acoustic telemetry data in R using JuPyTeR notebooks for reproducability.
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Parser and database loader for Imagenex 853 binary data files
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Information for the OTN workshop in June 2015. This workshop will focuss on demonstrating how to visualise and analyse OTN data in R. It will include tutorials on how to use basic GIS tools in R and a section on advance methods with TMB.
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Code associated with the manuscript: Auger-Methe, et al. State-space models' dirty little secrets: even simple linear Gaussian models can have parameter and state estimation problems.
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Information for TMB lunch and learn organise for the ICFT conference in July 2015
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Some demo scripts showing how to access data in an ERDDAP instance.
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A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.
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A bundle of tools and examples for working with slocum glider data
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Introduction to GIS tools in R
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Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.
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Tools for using TMB to fit models to ecological data, with a focus on fitting movement models on marine animals. Tools will range from general functions to look at parameter estimates (likelihood profile) to data-specific state-space models.
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A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.
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A collection of all the examples and presentation files given by Christoffer Moesgaard Albertsen (cmoe@aqua.dtu.dk) at OTN's TMB Workshop in Halifax NS on July 28-30th 2014.
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Tools to visualize OTN data products in Python